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  • What I want to talk to you about

  • is what we can learn from studying the genomes

  • of living people

  • and extinct humans.

  • But before doing that,

  • I just briefly want to remind you about what you already know:

  • that our genomes, our genetic material,

  • are stored in almost all cells in our bodies in chromosomes

  • in the form of DNA,

  • which is this famous double-helical molecule.

  • And the genetic information

  • is contained in the form of a sequence

  • of four bases

  • abbreviated with the letters A, T, C and G.

  • And the information is there twice --

  • one on each strand --

  • which is important,

  • because when new cells are formed, these strands come apart,

  • new strands are synthesized with the old ones as templates

  • in an almost perfect process.

  • But nothing, of course, in nature

  • is totally perfect,

  • so sometimes an error is made

  • and a wrong letter is built in.

  • And we can then see the result

  • of such mutations

  • when we compare DNA sequences

  • among us here in the room, for example.

  • If we compare my genome to the genome of you,

  • approximately every 1,200, 1,300 letters

  • will differ between us.

  • And these mutations accumulate

  • approximately as a function of time.

  • So if we add in a chimpanzee here, we will see more differences.

  • Approximately one letter in a hundred

  • will differ from a chimpanzee.

  • And if you're then interested in the history

  • of a piece of DNA, or the whole genome,

  • you can reconstruct the history of the DNA

  • with those differences you observe.

  • And generally we depict our ideas about this history

  • in the form of trees like this.

  • In this case, it's very simple.

  • The two human DNA sequences

  • go back to a common ancestor quite recently.

  • Farther back is there one shared with chimpanzees.

  • And because these mutations

  • happen approximately as a function of time,

  • you can transform these differences

  • to estimates of time,

  • where the two humans, typically,

  • will share a common ancestor about half a million years ago,

  • and with the chimpanzees,

  • it will be in the order of five million years ago.

  • So what has now happened in the last few years

  • is that there are account technologies around

  • that allow you to see many, many pieces of DNA very quickly.

  • So we can now, in a matter of hours,

  • determine a whole human genome.

  • Each of us, of course, contains two human genomes --

  • one from our mothers and one from our fathers.

  • And they are around three billion such letters long.

  • And we will find that the two genomes in me,

  • or one genome of mine we want to use,

  • will have about three million differences

  • in the order of that.

  • And what you can then also begin to do

  • is to say, "How are these genetic differences

  • distributed across the world?"

  • And if you do that,

  • you find a certain amount of genetic variation in Africa.

  • And if you look outside Africa,

  • you actually find less genetic variation.

  • This is surprising, of course,

  • because in the order of six to eight times fewer people

  • live in Africa than outside Africa.

  • Yet the people inside Africa

  • have more genetic variation.

  • Moreover, almost all these genetic variants

  • we see outside Africa

  • have closely related DNA sequences

  • that you find inside Africa.

  • But if you look in Africa,

  • there is a component of the genetic variation

  • that has no close relatives outside.

  • So a model to explain this

  • is that a part of the African variation, but not all of it,

  • [has] gone out and colonized the rest of the world.

  • And together with the methods to date these genetic differences,

  • this has led to the insight

  • that modern humans --

  • humans that are essentially indistinguishable from you and me --

  • evolved in Africa, quite recently,

  • between 100 and 200,000 years ago.

  • And later, between 100 and 50,000 years ago or so,

  • went out of Africa

  • to colonize the rest of the world.

  • So what I often like to say

  • is that, from a genomic perspective,

  • we are all Africans.

  • We either live inside Africa today,

  • or in quite recent exile.

  • Another consequence

  • of this recent origin of modern humans

  • is that genetic variants

  • are generally distributed widely in the world,

  • in many places,

  • and they tend to vary as gradients,

  • from a bird's-eye perspective at least.

  • And since there are many genetic variants,

  • and they have different such gradients,

  • this means that if we determine a DNA sequence --

  • a genome from one individual --

  • we can quite accurately estimate

  • where that person comes from,

  • provided that its parents or grandparents

  • haven't moved around too much.

  • But does this then mean,

  • as many people tend to think,

  • that there are huge genetic differences between groups of people --

  • on different continents, for example?

  • Well we can begin to ask those questions also.

  • There is, for example, a project that's underway

  • to sequence a thousand individuals --

  • their genomes -- from different parts of the world.

  • They've sequenced 185 Africans

  • from two populations in Africa.

  • [They've] sequenced approximately equally [as] many people

  • in Europe and in China.

  • And we can begin to say how much variance do we find,

  • how many letters that vary

  • in at least one of those individual sequences.

  • And it's a lot: 38 million variable positions.

  • But we can then ask: Are there any absolute differences

  • between Africans and non-Africans?

  • Perhaps the biggest difference

  • most of us would imagine existed.

  • And with absolute difference --

  • and I mean a difference

  • where people inside Africa at a certain position,

  • where all individuals -- 100 percent -- have one letter,

  • and everybody outside Africa has another letter.

  • And the answer to that, among those millions of differences,

  • is that there is not a single such position.

  • This may be surprising.

  • Maybe a single individual is misclassified or so.

  • So we can relax the criterion a bit

  • and say: How many positions do we find

  • where 95 percent of people in Africa have

  • one variant,

  • 95 percent another variant,

  • and the number of that is 12.

  • So this is very surprising.

  • It means that when we look at people

  • and see a person from Africa

  • and a person from Europe or Asia,

  • we cannot, for a single position in the genome with 100 percent accuracy,

  • predict what the person would carry.

  • And only for 12 positions

  • can we hope to be 95 percent right.

  • This may be surprising,

  • because we can, of course, look at these people

  • and quite easily say where they or their ancestors came from.

  • So what this means now

  • is that those traits we then look at

  • and so readily see --

  • facial features, skin color, hair structure --

  • are not determined by single genes with big effects,

  • but are determined by many different genetic variants

  • that seem to vary in frequency

  • between different parts of the world.

  • There is another thing with those traits

  • that we so easily observe in each other

  • that I think is worthwhile to consider,

  • and that is that, in a very literal sense,

  • they're really on the surface of our bodies.

  • They are what we just said --

  • facial features, hair structure, skin color.

  • There are also a number of features

  • that vary between continents like that

  • that have to do with how we metabolize food that we ingest,

  • or that have to do

  • with how our immune systems deal with microbes

  • that try to invade our bodies.

  • But so those are all parts of our bodies

  • where we very directly interact with our environment,

  • in a direct confrontation, if you like.

  • It's easy to imagine

  • how particularly those parts of our bodies

  • were quickly influenced by selection from the environment

  • and shifted frequencies of genes

  • that are involved in them.

  • But if we look on other parts of our bodies

  • where we don't directly interact with the environment --

  • our kidneys, our livers, our hearts --

  • there is no way to say,

  • by just looking at these organs,

  • where in the world they would come from.

  • So there's another interesting thing

  • that comes from this realization

  • that humans have a recent common origin in Africa,

  • and that is that when those humans emerged

  • around 100,000 years ago or so,

  • they were not alone on the planet.

  • There were other forms of humans around,

  • most famously perhaps, Neanderthals --

  • these robust forms of humans,

  • compared to the left here

  • with a modern human skeleton on the right --

  • that existed in Western Asia and Europe

  • since several hundreds of thousands of years.

  • So an interesting question is,

  • what happened when we met?

  • What happened to the Neanderthals?

  • And to begin to answer such questions,

  • my research group -- since over 25 years now --

  • works on methods to extract DNA

  • from remains of Neanderthals

  • and extinct animals

  • that are tens of thousands of years old.

  • So this involves a lot of technical issues

  • in how you extract the DNA,

  • how you convert it to a form you can sequence.

  • You have to work very carefully

  • to avoid contamination of experiments

  • with DNA from yourself.

  • And this then, in conjunction with these methods

  • that allow very many DNA molecules to be sequenced very rapidly,

  • allowed us last year

  • to present the first version of the Neanderthal genome,

  • so that any one of you

  • can now look on the Internet, on the Neanderthal genome,

  • or at least on the 55 percent of it

  • that we've been able to reconstruct so far.

  • And you can begin to compare it to the genomes

  • of people who live today.

  • And one question

  • that you may then want to ask

  • is, what happened when we met?

  • Did we mix or not?

  • And the way to ask that question

  • is to look at the Neanderthal that comes from Southern Europe

  • and compare it to genomes

  • of people who live today.

  • So we then look

  • to do this with pairs of individuals,

  • starting with two Africans,

  • looking at the two African genomes,

  • finding places where they differ from each other,

  • and in each case ask: What is a Neanderthal like?

  • Does it match one African or the other African?

  • We would expect there to be no difference,

  • because Neanderthals were never in Africa.

  • They should be equal, have no reason to be closer

  • to one African than another African.

  • And that's indeed the case.

  • Statistically speaking, there is no difference

  • in how often the Neanderthal matches one African or the other.

  • But this is different

  • if we now look at the European individual and an African.

  • Then, significantly more often,

  • does a Neanderthal match the European

  • rather than the African.

  • The same is true if we look at a Chinese individual

  • versus an African,

  • the Neanderthal will match the Chinese individual more often.

  • This may also be surprising

  • because the Neanderthals were never in China.

  • So the model we've proposed to explain this

  • is that when modern humans came out of Africa

  • sometime after 100,000 years ago,

  • they met Neanderthals.

  • Presumably, they did so first in the Middle East,

  • where there were Neanderthals living.

  • If they then mixed with each other there,

  • then those modern humans

  • that became the ancestors

  • of everyone outside Africa

  • carried with them this Neanderthal component in their genome

  • to the rest of the world.

  • So that today, the people living outside Africa

  • have about two and a half percent of their DNA

  • from Neanderthals.

  • So having now a Neanderthal genome

  • on hand as a reference point

  • and having the technologies

  • to look at ancient remains

  • and extract the DNA,

  • we can begin to apply them elsewhere in the world.

  • And the first place we've done that is in Southern Siberia

  • in the Altai Mountains

  • at a place called Denisova,

  • a cave site in this mountain here,

  • where archeologists in 2008

  • found a tiny little piece of bone --

  • this is a copy of it --

  • that they realized came from the last phalanx

  • of a little finger of a pinky of a human.

  • And it was well enough preserved

  • so we could determine the DNA from this individual,

  • even to a greater extent

  • than for the Neanderthals actually,

  • and start relating it to the Neanderthal genome

  • and to people today.

  • And we found that this individual

  • shared a common origin for his DNA sequences

  • with Neanderthals around 640,000 years ago.

  • And further back, 800,000 years ago

  • is there a common origin

  • with present day humans.

  • So this individual comes from a population

  • that shares an origin with Neanderthals,

  • but far back and then have a long independent history.

  • We call this group of humans,

  • that we then described for the first time

  • from this tiny, tiny little piece of bone,

  • the Denisovans,

  • after this place where they were first described.

  • So we can then ask for Denisovans

  • the same things as for the Neanderthals:

  • Did they mix with ancestors of present day people?

  • If we ask that question,

  • and compare the Denisovan genome

  • to people around the world,

  • we surprisingly find

  • no evidence of Denisovan DNA

  • in any people living even close to Siberia today.

  • But we do find it in Papua New Guinea

  • and in other islands in Melanesia and the Pacific.

  • So this presumably means

  • that these Denisovans had been more widespread in the past,

  • since we don't think that the ancestors of Melanesians

  • were ever in Siberia.

  • So from studying

  • these genomes of extinct humans,

  • we're beginning to arrive at a picture of what the world looked like

  • when modern humans started coming out of Africa.

  • In the West, there were Neanderthals;

  • in the East, there were Denisovans --

  • maybe other forms of humans too

  • that we've not yet described.

  • We don't know quite where the borders between these people were,

  • but we know that in Southern Siberia,

  • there were both Neanderthals and Denisovans

  • at least at some time in the past.

  • Then modern humans emerged somewhere in Africa,

  • came out of Africa, presumably in the Middle East.

  • They meet Neanderthals, mix with them,

  • continue to spread over the world,

  • and somewhere in Southeast Asia,

  • they meet Denisovans and mix with them

  • and continue on out into the Pacific.

  • And then these earlier forms of humans disappear,

  • but they live on a little bit today

  • in some of us --

  • in that people outside of Africa have two and a half percent of their DNA

  • from Neanderthals,

  • and people in Melanesia

  • actually have an additional five percent approximately

  • from the Denisovans.

  • Does this then mean that there is after all

  • some absolute difference

  • between people outside Africa and inside Africa

  • in that people outside Africa

  • have this old component in their genome

  • from these extinct forms of humans,

  • whereas Africans do not?

  • Well I don't think that is the case.

  • Presumably, modern humans

  • emerged somewhere in Africa.

  • They spread across Africa also, of course,

  • and there were older, earlier forms of humans there.

  • And since we mixed elsewhere,

  • I'm pretty sure that one day,

  • when we will perhaps have a genome

  • of also these earlier forms in Africa,

  • we will find that they have also mixed

  • with early modern humans in Africa.

  • So to sum up,

  • what have we learned from studying genomes

  • of present day humans

  • and extinct humans?

  • We learn perhaps many things,

  • but one thing that I find sort of important to mention

  • is that I think the lesson is that we have always mixed.

  • We mixed with these earlier forms of humans,

  • wherever we met them,

  • and we mixed with each other ever since.

  • Thank you for your attention.

  • (Applause)

What I want to talk to you about

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